Hi, i had the same issue, which was driving me crazy too. The solution that worked for me was to:
1- click on a song (right click and go "Auto-Tag from Filename", then adjut the window size and position, then
close. (Somehow it saves the settings for the following step)
2- Second step was to right lick on "Auto-Tag from Web" and then it opened to the same settings as the previous
step.
I hope this works for you too

(My settings: Win7, ie9 & MediaMonkey 3.2.0 (tried to upgrade to MediaMonkey 3.5 but it did not make a difference so reverted back to MM 3.2.0 and the steps above worked anyway)
Hi, i had the same issue, which was driving me crazy too. The solution that worked for me was to:
1- click on a song (right click and go "Auto-Tag from Filename", then adjut the window size and position, then
close. (Somehow it saves the settings for the following step)
2- Second step was to right lick on "Auto-Tag from Web" and then it opened to the same settings as the previous
step.
I hope this works for you too :-) (My settings: Win7, ie9 & MediaMonkey 3.2.0 (tried to upgrade to MediaMonkey 3.5 but it did not make a difference so reverted back to MM 3.2.0 and the steps above worked anyway)