So, I found a bit of a work around on my own if any body is having the same issues. I found... 1. I can only use wifi sync. If I connect via usb my internal and external SD locations get confused within MMW 2. In MMA /options/sync location/settings/internal storage a. Keep "sync to this location ...

I have found that just deleting the "files on the disk" seems to confuse MMA. There seems to be an issue with MMA's scanning function, where it does not recognize that the files have been deleted because they are still within the MMA database. My solution to this has been to delete all of the files ...